ENTRAF

An Encyclopedia of well-annotated DNA-binding TRanscription factors in Bacteria and Archaea.

Transcription factor information

General information

ENTRAF ID ENTRAF0404
Gene name rfaH
Uniprot ID RFAH_ECOLI
Organism Escherichia coli (strain K12)
Aminoacid sequence MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
FASTA file Download
Length 162

Functional information

Function Uniprot Enhances distal genes transcription elongation in a specialized subset of operons that encode extracytoplasmic components. RfaH is recruited into a multi-component RNA polymerase complex by the ops element, which is a short conserved DNA sequence located downstream of the main promoter of these operons. Once bound, RfaH suppresses pausing and inhibits Rho-dependent and intrinsic termination at a subset of sites. Termination signals are bypassed, which allows complete synthesis of long RNA chains. Enhances expression of several operons involved in synthesis of lipopolysaccharides, exopolysaccharides, hemolysin, and sex factor. Also negatively controls expression and surface presentation of AG43 and possibly another AG43-independent factor that mediates cell-cell interactions and biofilm formation.
Role Repressor
Protein family RfaH family
Structure (PDB ID) 2OUG

References

Pubmed ID 1 10660066
Pubmed ID 2 1584020
Pubmed ID 3 1379743
Pubmed ID 4 9278503
Pubmed ID 5 16738553
Pubmed ID 6 8606157
Pubmed ID 7 8951819
Pubmed ID 8 9171395
Pubmed ID 9 9426123
Pubmed ID 10 10660066
Pubmed ID 11 12007406
Pubmed ID 12 11983161
Pubmed ID 13 16452414
Pubmed ID 14 17434131

Experimental evidences

BPP