ENTRAF

An Encyclopedia of well-annotated DNA-binding TRanscription factors in Bacteria and Archaea.

Transcription factor information

General information

ENTRAF ID ENTRAF0648
Gene name yafQ
Uniprot ID YAFQ_ECOLI
Organism Escherichia coli (strain K12)
Aminoacid sequence MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALFG
FASTA file Download
Length 92

Functional information

Function Uniprot Toxic component of a type II toxin-antitoxin (TA) module. A sequence-specific mRNA endoribonuclease that inhibits translation elongation and induces bacterial stasis. Cleavage occurs between the second and third residue of the Lys codon followed by a G or A (5'AAA(G/A)3'), is reading-frame dependent and occurs within the 5' end of most mRNAs. Ribosome-binding confers the sequence specificity and reading frame-dependence. When overexpressed in liquid media YafQ partially inhibits protein synthesis, with a reduction in growth rate and colony growth rate. This effect is counteracted by coexpression with cognate antitoxin DinJ. YafQ and DinJ together bind their own promoter, and repress its expression.
Role Repressor
Protein family RelE-like
Structure (PDB ID) 4Q2U

References

Pubmed ID 1 26527724
Pubmed ID 2 17263853
Pubmed ID 3 19210620
Pubmed ID 4 24898247

Experimental evidences

BPP, SM, GEA